Gallery

Live examples, streamed on demand.

Veiled chameleon

CT · 16-bit · 2.2 GB · 1024 × 1024 × 1080

CT scan of Chamaeleo calyptratus. DVR mode with a grayscale transfer function and window/level tuned for soft-tissue contrast.

Open SciVis — Chameleon ↗

Woodbranch

µCT · 16-bit · 16.0 GB · 2048³

Micro-CT of a wood branch, streamed directly from an OME-Zarr v0.5 store on S3. Shown in DVR mode.

Open SciVis Datasets ↗

Beechnut

µCT · 16-bit · 3.0 GB · 1024 × 1024 × 1546

MicroCT of a dried beechnut, streamed from an OME-Zarr v0.5 store. Shown in DVR mode.

Open SciVis — Beechnut ↗

Backpack

CT · 16-bit · 187 MB · 512 × 512 × 373

CT scan from the Open SciVis collection, shown in DVR mode with a cool-warm transfer function.

Open SciVis Datasets ↗

Kingsnake

CT · 8-bit · 795 MB · 1024 × 1024 × 795

CT scan from the Open SciVis collection, shown in MIP mode.

Open SciVis Datasets ↗

Pawpawsaurus

CT · 16-bit · 1.3 GB · 958 × 646 × 1088

CT scan of a Pawpawsaurus skull from the Open SciVis collection, shown in isosurface mode.

Open SciVis Datasets ↗

Vibrio cholerae

Cryo-ET · 32-bit · 1.1 GB · 1023 × 1440 × 400

Cryo-ET tomogram from the CryoET Data Portal. DVR mode with an inverted grayscale transfer function and Z-axis clipping to isolate a region of interest.

CryoET Data Portal ↗

Zebrafish lateral line

Fluorescence · 8-bit · 2 channels · 1584 × 788 × 142

AiryScan confocal fluorescence of the zebrafish posterior lateral line primordium. lynEGFP (membrane) + NLStdTomato (nuclear). Shown in MIP mode.

IDR0079 · Hartmann et al., 2020 ↗

Human fibroblast (IDR0101)

Fluorescence · 16-bit · 4 channels · 2048 × 2048 × 35

Confocal microscopy of human fibroblasts (PGP1) from an in situ genome sequencing study. Four channels across 35 z-slices, shown in MIP mode.

IDR0101 · Payne et al., 2021 ↗

Yeast smFISH (IDR0047)

Fluorescence · 16-bit · 4 channels · 2048 × 2048 × 25

Single-molecule mRNA FISH in Saccharomyces cerevisiae. Channels: CY5, TMR, DAPI, and transmitted light. Shown in slice mode.

IDR0047 · Li & Neuert, 2019 ↗

Dataset credits

• Chameleon — CT scan of Chamaeleo calyptratus. Digital Morphology, 2003.
• Beechnut — MicroCT scan. Computer-Assisted Paleoanthropology group, University of Zurich.
• Stag Beetle — Industrial CT scan. Meister Eduard Gröller, Georg Glaeser, Johannes Kastner, 2005.
• Vibrio cholerae — Cryo-ET tomogram. CryoET Data Portal.
• IDR0079 — Zebrafish lateral line cellular architecture. Hartmann et al., 2020. Image Data Resource.
• IDR0101 — In situ genome sequencing. Payne et al., 2021. Image Data Resource.
• IDR0047 — Yeast smFISH mRNA expression. Li & Neuert, 2019. Image Data Resource.

Single-channel datasets from the Open SciVis Datasets collection and the CryoET Data Portal. Multichannel datasets from the Image Data Resource.